Gents
I finally had the chance to diagnose further today. Summary as follows.
Orange and Black wires correctly terminated into pins 5 and 4 respectfully. Spare wires confirmed secured away from the pins and from each other.
A replacement cable was sourced from Farnell and piggy-backed onto existing connection. Undisturbed output as follows :
$GPGGA,131831,5320.493,N,00231.888,W,1,09,1.1,74.5,M,48.8,M,,*60
$GPVTG,000.0,T,,,0.00,N,0.00,K*2D
$GPRMC,131832,A,5320.493,N,00231.888,W,0.000,0,190120,,,A*7F
$GPGGA,131832,5320.493,N,00231.888,W,1,09,1.1,74.3,M,48.8,M,,*65
$GPVTG,000.0,T,,,0.00,N,0.00,K*2D
$GPRMC,131833,A,5320.493,N,00231.888,W,0.000,0,190120,,,A*7E
$GPGGA,131833,5320.493,N,00231.888,W,1,09,1.1,74.1,M,48.8,M,,*66
$GPVTG,000.0,T,,,0.00,N,0.00,K*2D
$GPRMC,131834,A,5320.493,N,00231.888,W,0.000,0,190120,,,A*79
$GPGGA,131834,5320.493,N,00231.888,W,1,09,1.1,74.2,M,48.8,M,,*62
$GPVTG,000.0,T,,,0.00,N,0.00,K*2D
$GPRMC,131835,A,5320.493,N,00231.888,W,0.000,0,190120,,,A*78
$GPGGA,131835,5320.493,N,00231.888,W,1,09,1.1,74.1,M,48.8,M,,*60
$GPVTG,000.0,T,,,0.00,N,0.00,K*2D
$GPRMC,131836,A,5320.493,N,00231.888,W,0.000,0,190120,,,A*7B
$GPGGA,131836,5320.493,N,00231.888,W,1,09,1.1,74.0,M,48.8,M,,*62
$GPVTG,000.0,T,,,0.00,N,0.00,K*2D
$GPRMC,131837,A,5320.493,N,00231.888,W,0.000,0,190120,,,A*7A
$GPGGA,131837,5320.493,N,00231.888,W,1,09,1.1,73.9,M,48.8,M,,*6D
$GPVTG,000.0,T,,,0.00,N,0.00,K*2D
$GPRMC,131838,A,5320.493,N,00231.888,W,0.000,0,190120,,,A*75
$GPGGA,131838,5320.493,N,00231.888,W,1,09,1.1,73.7,M,48.8,M,,*6C
$GPVTG,000.0,T,,,0.00,N,0.00,K*2D
$GPRMC,131839,A,5320.493,N,00231.888,W,0.000,0,190120,,,A*74
$GPGGA,131839,5320.493,N,00231.888,W,1,09,1.1,73.6,M,48.8,M,,*6C
$GPVTG,000.0,T,,,0.00,N,0.00,K*2D
$GPRMC,131840,A,5320.493,N,00231.888,W,0.000,0,190120,,,A*7A
$GPGGA,131840,5320.493,N,00231.888,W,1,09,1.1,73.6,M,48.8,M,,*62
$GPVTG,000.0,T,,,0.00,N,0.00,K*2D
$GPRMC,131841,A,5320.493,N,00231.888,W,0.000,0,190120,,,A*7B
$GPGGA,131841,5320.493,N,00231.888,W,1,09,1.1,73.5,M,48.8,M,,*60
$GPVTG,000.0,T,,,0.00,N,0.00,K*2D
$GPRMC,131842,A,5320.493,N,00231.888,W,0.000,0,190120,,,A*78
$GPGGA,131842,5320.493,N,00231.888,W,1,09,1.1,73.5,M,48.8,M,,*63
$GPVTG,000.0,T,,,0.00,N,0.00,K*2D
$GPRMC,131843,A,5320.493,N,00231.888,W,0.000,0,190120,,,A*79
$GPGGA,131843,5320.493,N,00231.888,W,1,09,1.1,73.5,M,48.8,M,,*62
$GPVTG,000.0,T,,,0.00,N,0.00,K*2D
$GPRMC,131844,A,5320.493,N,00231.888,W,0.000,0,190120,,,A*7E
$GPGGA,131844,5320.493,N,00231.888,W,1,09,1.1,73.4,M,48.8,M,,*64
$GPVTG,000.0,T,,,0.00,N,0.00,K*2D
$GPRMC,131845,A,5320.493,N,00231.888,W,0.000,0,190120,,,A*7F
$GPGGA,131845,5320.493,N,00231.888,W,1,09,1.1,73.3,M,48.8,M,,*62
$GPVTG,000.0,T,,,0.00,N,0.00,K*2D
$GPRMC,131846,A,5320.493,N,00231.888,W,0.000,0,190120,,,A*7C
$GPGGA,131846,5320.493,N,00231.888,W,1,09,1.1,73.3,M,48.8,M,,*61
$GPVTG,000.0,T,,,0.00,N,0.00,K*2D
No visible garbage anyway in the output.
Having not detected anything unusual in the output, I've left the existent cable in situ but swapped the USB onto port 2 and increased speeds on both sides to 9600. Transponder correctly picked up GPS position.
We will flight test on the new port and report any further anomalies.
Regards
Charlie