Rog,
As this function is still in development it's very difficult to say definitively which way it will end up, however it seems likely that a 'dual SDR' option will be simpler to configure and less likely to negatively affect 1090MHz traffic reception - which of course must be our priority.
As I said above, a dual SDR installation can be fitted with either a single (split) or dual (separate) antennas. FWIW, I have done limited testing (no 978MHz transmitters up here in Scotland) using a single 978MHz antenna and have seen no significant effect on 1090 Traffic reception. As I already have 5 antennas + 3 x GPS on/in my flexwing, I would probably go for a single antenna setup to keep antennas to the 'minimum'.
Regards
Peter